Omics Playground
Omics Playground (OP) is a self-service
bioinformatics platform for the visualization, analytics and
exploration of Big Omics data in the cloud. OP is specially
suited to less computer-savvy biologists, allowing to
produce both basic and more sophisticated analysis of large
gene expression data in a user-friendly and intuitive
graphical user interface that requires no previous
programming experience.
For an overview of the platform, please refer to our publication: Murodzhon Akhmedov, Axel Martinelli, Roger Geiger, Ivo Kwee. Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data. NAR Genomics and Bioinformatics, Volume 2, Issue 1, March 2020, lqz019, https://doi.org/10.1093/nargab/lqz019
For the "VirOmics Playground", our special edition Playground with more than 200 gene expression datasets about virus infections, please go to the dedicated webiste covid19.bigomics.ch
The following servers are free and open to all users and there is no login requirement. You may also upload your own dataset.
Omics Playground (archs4)
Ready-to-analyze 5865 RNA-seq datasets from GEO that have been pre-processed by the ARCHS4 project (Lachmann et al, Nat.Comm.208).
VirOmics Playground (COVID-19 special edition)
More than 200 gene expression datasets about virus infections, including SARS-CoV2.
Omics Playground (contrib)
This server contains several user contributed/requested datasets. You may also upload your own dataset.